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Contents
1. Introduction: Search, Collect and Capture, Analyze, Annotate, Store/Preserve, Assign Access Controls pg. 1
2. Tools Already Covered: OpenRefine, R and Rstudio, Python and Jupyter pg. 3
3. Tools Covered in this Unit: Open Science Framework (OSF), FigShare, MedeleyData, NIH/NCBI Databases pg. 4
4. Some Considerations Troubleshooting, Extract Transform Load (ETL), Data Visualization pg. 5
5. Tutorials pg. 7 see pg. 155
-- https://help.figshare.com/article/how-to-edit-or-delete-my-data
-- https://help.figshare.com/article/how-to-sync-orcid-and-datacite-for-figshare
-- https://help.figshare.com/article/how-to-share-cite-or-embed-your-data
-- https://help.figshare.com/article/how-to-use-projects-and-collaborate-on-figshar...
-- https://help.figshare.com/article/upload-large-datasets-and-bulk-upload-using-th...
-- https://help.figshare.com/article/how-to-upload-linked-files-embargoed-and-restr...
-- https://help.figshare.com/article/how-to-sync-orcid-and-datacite-for-figshare
-- https://help.figshare.com/article/how-to-connect-figshare-with-your-github-accou...
-- https://help.figshare.com/article/how-to-use-keywords-to-organize-files
-- https://help.figshare.com/article/how-to-follow-research-you-care-about
-- https://help.figshare.com/article/how-to-use-advanced-search-in-figshare
-- https://help.figshare.com/article/how-to-choose-the-most-appropriate-license
-- https://help.figshare.com/article/how-to-edit-the-publication-timeline-on-your-i...
-- https://help.figshare.com/article/how-to-use-the-figshare-api
-- https://help.figshare.com/article/how-to-use-the-oai-pmh
-- https://help.figshare.com/article/how-to-get-a-personal-token
-- https://help.figshare.com/article/how-to-edit-in-batch
-- https://help.figshare.com/article/how-to-request-more-storage
-- https://help.figshare.com/article/how-to-log-in-to-your-institutional-figshare-p...
6. Elsevier pg. 11 & pg. 164, 184
-- https://www.elsevier.com/__data/assets/pdf_file/0009/990900/Mendeley-Data-Factsh...
-- https://www.elsevier.com/__data/assets/pdf_file/0007/1016818/ACAD_LIB_MD_DataMon...
-- https://www.elsevier.com/__data/assets/pdf_file/0019/300619/Research-Data-Manage...
-- https://www.elsevier.com/__data/assets/pdf_file/0011/902639/ACAD_RES_MDD_INFO_Fi...
-- https://www.elsevier.com/__data/assets/pdf_file/0013/1012036/ACAD_RES_MDD_INFO_F...
-- https://www.elsevier.com/solutions/mendeley-data-platform/resource-center/compon... leadership¤t_result_page=1&results_per_page=0&submitted_search_category=&mode=&search_page_300638_submit_button=Submit
-- https://www.elsevier.com/solutions/mendeley-data-platform/resource-center/compon... Journals¤t_result_page=1&results_per_page=0&submitted_search_category=&mode=&search_page_300638_submit_button=Submit
-- https://www.elsevier.com/solutions/mendeley-data-platform/resource-center/compon... Lab Notebook¤t_result_page=1&results_per_page=0&submitted_search_category=&mode=&search_page_300638_submit_button=Submit
-- https://www.elsevier.com/connect/spotlighting-fair-data-and-the-researchers-behi...
-- https://www.elsevier.com/connect/5-trends-in-research-data-management
-- Assessment of Data Fitness for Use https://www.rd-alliance.org/group/wdsrda-assessment-data-fitness-use-wg/outcomes...
-- http://www.data-intelligence.org/p/61/#
-- https://www.elsevier.com/connect/6-insights-from-leading-universities-on-managin...
-- https://www.elsevier.com/connect/4-principles-for-unlocking-the-full-potential-o...
-- http://doi.org/10.5334/dsj-2019-009
--RECOMMENDED VERSUS CERTIFIED REPOSITORIES https://datascience.codata.org/
-- https://www.elsevier.com/__data/assets/pdf_file/0005/504563/08212017144742_deWaa...
-- https://www.elsevier.com/about/open-science/research-data/open-data-report
-- https://doi.org/10.1101/100784 pg. 15
-- https://www.elsevier.com/connect/making-data-citation-a-reality
-- http://www.isi.edu/sites/default/files/users/burns/bmkeg/BC2016_paper_5.pdf pg. 16
-- http://www.scidatacon.org/2016/sessions/37/paper/11/
-- https://www.publishingcampus.elsevier.com/pages/blog?id=492
-- https://www.elsevier.com/connect/managing-your-research-data-to-make-it-reusable
-- FAIR http://www.nature.com/articles/sdata201618
-- https://www.elsevier.com/connect/data-citation-is-becoming-real-with-force11-and...
-- https://www.elsevier.com/connect/10-aspects-of-highly-effective-research-data
-- https://f1000research.com/articles/4-134/v2
-- https://scholar.google.com/scholar?oi=bibs&cluster=6776049703317355161&b...
-- https://scholar.google.com/scholar?oi=bibs&cluster=12989408777929383098&...
7. Overview of Platform Tools p.g 22
--NIH/NCBI Repositories pg. 23 & 39, 102, 107, 110,
--Organization of BioProject, BioSample and Data Objects pg. 26
--Attributes for a Sample Type pg. 29
8. NIH/NCBI Repositories pg 39 & 166
9. Overview of Platform Tools: Figshare pg. 49 see Tutorials pg. 7
--What is Figshare pg. 50
--The Research Lifecycle pg. 51
--Collect More pg. 58
--https://doi.org/10.1371/journal.pone.0166083
--Enable Discovery pg. 63
10. Summary pg. 66
11. Overview of Platform Tools: Figshare pg. 67
--DOI
--Integrations pg. 74
--Project Site pg. 75
--Summary pg. 76
12. Overview of Platform Tools: Mendeley Data Search and Scopus pg. 77
13. NIH Data Sharing Policy pg. 104
14. NIH Public Access Policy pg. 105
15. OSTP Memo 2013 pg. 107
16. NIH Data Sharing Policies pg. 113,114
17. Data Repositories and Trusted Partners: Array Express, DNA Data Bank of Japan and more.. pg. 116
18. Submission Portal Information U.S. National Library of Medicine pg. 118
19. Overview of Platform Tools: Open Science Framework (OSF), pg. 119 & 176
20. Summary pg. 145 & 154
21. Open Science Framework pg. 148
22. Transcripts pg. 155
--Figshare pg. 155
--Figshare Introduction pg. 159
--Welcome Message pg. 161
--Mendeley Data Demonstration pg. 164 & 184
--NIH/NCBI Repositories Demo pg. 166
--OSF Demonstration pg. 176 & 119
SA - Data Reproducibility Sciences
RT - Archives
BT - Library Collections
NT - FAIR
UF - Open Science
SN - This is an upsell of the products that provided funding for this presentation (This entry does not reference a hierarchical list)